Browsing by Author "Whittaker, Robert J."
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- Are species-area relationships from entire archipelagos congruent with those of their constituent islands?Publication . Santos, Ana C.; Whittaker, Robert J.; Triantis, Kostas A.; Borges, Paulo A. V.; Jones, Owen R.; Quicke, Donald L. J.; Hortal, JoaquínAIM To establish the extent to which archipelagos follow the same species–area relationship as their constituent islands and to explore the factors that may explain departures from the relationship. LOCATION Thirty-eight archipelagos distributed worldwide. METHODS We used ninety-seven published datasets to create island species–area relationships (ISARs) using the Arrhenius logarithmic form of the power model. Observed and predicted species richness of an archipelago and of each of its islands were used to calculate two indices that determined whether the archipelago followed the ISAR. Archipelagic residuals (ArcRes) were calculated as the residual of the prediction provided by the ISAR using the total area of the archipelago, standardized by the total richness observed in the archipelago. We also tested whether any characteristic of the archipelago (geological origin and isolation) and/or taxon accounts for whether an archipelago fits into the ISAR or not. Finally, we explored the relationship between ArcRes and two metrics of nestedness. RESULTS The archipelago was close to the ISAR of its constituent islands in most of the cases analysed. Exceptions arose for archipelagos where (i) the slopes of the ISAR are low, (ii) observed species richness is higher than expected by the ISAR and/or (iii) distance to the mainland is small. The archipelago's geological origin was also important; a higher percentage of oceanic archipelagos fit into their ISAR than continental ones. ArcRes indicated that the ISAR underpredicts archipelagic richness in the least isolated archipelagos. Different types of taxon showed no differences in ArcRes. Nestedness and ArcRes appear to be related, although the form of the relationship varies between metrics. MAIN CONCLUSIONS Archipelagos, as a rule, follow the same ISAR as their constituent islands. Therefore, they can be used as distinct units themselves in large-scale biogeographical and macroecological studies. Departure from the ISAR can be used as a crude indicator of richness-ordered nestedness, responsive to factors such as isolation, environmental heterogeneity, number and age of islands.
- Assessing tropical forest restoration after fire using birds as indicators : An afrotropical case studyPublication . Rurangwa, Marie Laure; Matthews, Thomas J.; Niyigaba, Protais; Tobias, Joseph A.; Whittaker, Robert J.The necessity to restore rainforest habitats degraded by anthropogenic fires is widely recognized, however, research on restoration approaches has mainly centred on the recovery of forest structural complexity. There is insufficient evidence on the efficacy of restoration methods in the recovery of the faunal diversity and features linked to key ecosystem functions. We assessed the taxonomic diversity and functional trait structure of bird assemblages in undisturbed primary forest and fire-affected habitats undergoing natural regeneration, as well as areas of assisted natural regeneration, in Nyungwe National Park, Rwanda. We compiled bird occurrence data from point-count sampling, and obtained morphological traits for all species in our assemblages using measurements taken from wild birds and museum specimens. We found marked differences in species composition between primary forest habitats and regenerating forest, with similarity increasing over time since perturbation. Taxonomic diversity was higher in primary forest, and similar between the two restoration approaches. Functional diversity was lower in assisted naturally regenerated habitats, although separate analyses within dietary guilds revealed no differences across habitats. Among desired restoration outcomes, tree species diversity was the leading positive driver of avian species diversity, fern coverage exerted negative effects, while canopy cover had a positive but weak influence. Our findings underscore the importance of preventing anthropogenic fires in tropical rainforest since their impacts on ecological processes are not easily reversed, as shown by the lack of improvement in avian diversity metrics under assisted naturally regeneration in relation to natural regeneration. We stress the need to document both floral and faunal recovery in order to aid informed decision-making on restoration methods.
- A biogeographical perspective on species abundance distributions : recent advances and opportunities for future researchPublication . Matthews, Thomas J.; Borges, Paulo A. V.; Azevedo, Eduardo B.; Whittaker, Robert J.It has become increasingly recognized that multiple processes can generate similar shapes of species abundance distributions (SADs), with the result that the fit of a given SAD model cannot unambiguously provide evidence in support of a given theory or model. An alternative approach to comparing the fit of different SAD models to data from a single site is to collect abundance data from a variety of sites, and then build models to analyse how different SAD properties (e.g. form, skewness) vary with different predictor variables. Such a biogeographical approach to SAD research is potentially very revealing, yet there has been a general lack of interest in SADs in the biogeographical literature. In this Perspective, we address this issue by highlighting findings of recent analyses of SADs that we consider to be of intrinsic biogeographical interest. We use arthropod data drawn from the Azorean archipelago to further highlight how analyses of SAD form and function may be biogeographically informative. We hope that, by reviewing a number of novel approaches, our article may prove to be a catalyst for a greater interest in analysing SADs in biogeography.
- Comparative phylogeography of endemic Azorean arthropodsPublication . Parmakelis, Aristeidis; Rigal, François; Mourikis, Thanos; Balanika, Katerina; Terzopoulou, Sofia; Rego, Carla; Amorim, Isabel R.; Crespo, Luís C.; Pereira, Fernando E. A.; Triantis, Kostas A.; Whittaker, Robert J.; Borges, Paulo A. V.BACKGROUND: For a remote oceanic archipelago of up to 8 Myr age, the Azores have a comparatively low level of endemism. We present an analysis of phylogeographic patterns of endemic Azorean island arthropods aimed at testing patterns of diversification in relation to the ontogeny of the archipelago, in order to distinguish between alternative models of evolutionary dynamics on islands. We collected individuals of six species (representing Araneae, Hemiptera and Coleoptera) from 16 forest fragments from 7 islands. Using three mtDNA markers, we analysed the distribution of genetic diversity within and between islands, inferred the differentiation time-frames and investigated the inter-island migration routes and colonization patterns. RESULTS: Each species exhibited very low levels of mtDNA divergence, both within and between islands. The two oldest islands were not strongly involved in the diffusion of genetic diversity within the archipelago. The most haplotype-rich islands varied according to species but the younger, central islands contributed the most to haplotype diversity. Colonization events both in concordance with and in contradiction to an inter-island progression rule were inferred, while a non-intuitive pattern of colonization from western to eastern islands was also inferred. CONCLUSIONS: The geological development of the Azores has followed a less tidy progression compared to classic hotspot archipelagos, and this is reflected in our findings. The study species appear to have been differentiating within the Azores for <2 Myr, a fraction of the apparent life span of the archipelago, which may indicate that extinction events linked to active volcanism have played an important role. Assuming that after each extinction event, colonization was initiated from a nearby island hosting derived haplotypes, the apparent age of species diversification in the archipelago would be moved closer to the present after each extinction-recolonization cycle. Exploiting these ideas, we propose a general model for future testing.
- Development of 28 polymorphic microsatellite markers for the endemic Azorean spider Sancus acoreensis (Araneae, Tetragnathidae)Publication . Parmakelis, Aristeidis; Balanika, Katerina; Terzopoulou, Sofia; Rigal, François; Beasley, Rochelle R.; Jones, Kenneth L.; Lance, Stacey L.; Whittaker, Robert J.; Triantis, Kostas A.; Borges, Paulo A. V."We isolated and characterized a total of 28 microsatellite loci from Sancus acoreensis. Loci were screened in 26 individuals originating from seven (Flores, Faial, Pico, São Jorge, Terceira, São Miguel, and Santa Maria) out of the nine islands of the Azores. The number of alleles per locus ranged from 2 to 14, observed heterozygosity ranged from 0.040 to 0.708, and the probability of identity values ranged from 0.02 to 0.97. Sancus acoreensis is a Laurel forest specialist species, endemic to the Azores, and is facing a great extinction risk due to the severe fragmentation of its habitat. The newly developed microsatellite loci will aid in detecting signs of population bottlenecks and pinpoint the island populations that are facing the greatest risk of extinction. […]".
- Dispersal ability determines the scaling properties of species abundance distributions : a case study using arthropods from the AzoresPublication . Borda-de-Água, Luis; Whittaker, Robert J.; Cardoso, Pedro; Rigal, François; Santos, Ana M. C.; Amorim, Isabel R.; Parmakelis, Aristeidis; Triantis, Kostas A.; Pereira, Henrique M.; Borges, Paulo A. V.Species abundance distributions (SAD) are central to the description of diversity and have played a major role in the development of theories of biodiversity and biogeography. However, most work on species abundance distributions has focused on one single spatial scale. Here we used data on arthropods to test predictions obtained with computer simulations on whether dispersal ability influences the rate of change of SADs as a function of sample size. To characterize the change of the shape of the SADs we use the moments of the distributions: the skewness and the raw moments. In agreement with computer simulations, low dispersal ability species generate a hump for intermediate abundance classes earlier than the distributions of high dispersal ability species. Importantly, when plotted as function of sample size, the raw moments of the SADs of arthropods have a power law pattern similar to that observed for the SAD of tropical tree species, thus we conjecture that this might be a general pattern in ecology. The existence of this pattern allows us to extrapolate the moments and thus reconstruct the SAD for larger sample sizes using a procedure borrowed from the field of image analysis based on scaled discrete Tchebichef moments and polynomials.
- Drivers of extinction : the case of Azorean beetlesPublication . Terzopoulou, Sofia; Rigal, François; Whittaker, Robert J.; Borges, Paulo A. V.; Triantis, Kostas A.Oceanic islands host a disproportionately high fraction of endangered or recently extinct endemic species. We report on species extinctions among endemic Azorean beetles following 97% habitat loss since AD 1440. We infer extinctions from historical and contemporary records and examine the influence of three predictors: geographical range, habitat specialization and body size. Of 55 endemic beetle species investigated (out of 63), seven can be considered extinct. Single-island endemics (SIEs) were more prone to extinction than multi-island endemics. Within SIEs restricted to native habitat, larger species were more extinction-prone. We thus show a hierarchical path to extinction in Azorean beetles: species with small geographical range face extinction first, with the larger bodied ones being the most threatened. Our study provides a clear warning of the impact of habitat loss on island endemic biotas.
- The effects of land-use change on arthropod richness and abundance on Santa Maria Island (Azores): unmanaged plantations favour endemic beetlesPublication . Meijer, Seline S.; Whittaker, Robert J.; Borges, Paulo A. V.We study how endemic, native and introduced arthropod species richness, abundance, diversity and community composition vary between four different habitat types (native forest, exotic forest of Cryptomeria japonica, semi-natural pasture and intensive pasture) and how arthropod richness and abundance change with increasing distance from the native forest in adjacent habitat types in Santa Maria Island, the Azores. Arthropods were sampled in four 150 m long transects in each habitat type. Arthropods were identified to species level and classified as Azorean endemic, single-island endemic (SIE), native, or introduced. The native forest had the highest values for species richness of Azorean endemics, SIEs and natives; and also had highest values of Azorean endemic diversity (Fisher’s alpha). In contrast, the intensive pasture had the lowest values for endemic and native species richness and diversity, but the highest values of total arthropod abundance and introduced species richness and diversity. Arthropod community composition was significantly different between the four habitat types. In the semi-natural pasture, the number of SIE species decreased with increasing distance from the native forest, and in the exotic forest the abundance of both Azorean endemics and SIEs decreased with increasing distance from the native forest. There is a gradient of decreasing arthropod richness and abundance from the native forest to the intensive pasture. Although this study demonstrates the important role of the native forest in arthropod conservation in the Azores, it also shows that unmanaged exotic forests have provided alternative habitat suitable for some native species of forest specialist arthropods, particularly saproxylic beetles.
- Effects of land‐use change on avian taxonomic, functional and phylogenetic diversity in a tropical montane rainforestPublication . Rurangwa, Marie Laure; Aguirre‐Gutiérrez, Jesús; Matthews, Thomas J.; Niyigaba, Protais; Wayman, Joseph P.; Tobias, Joseph A.; Whittaker, Robert J.AIM: Although land use change is a leading cause of biodiversity loss worldwide, there is scant information on the extent to which it has affected the structure and composition of bird communities in the Afrotropical region. This study aimed to quantify the effects of habitat transformation on taxonomic, functional and phylogenetic diversity in Afrotropical bird communities. LOCATION: Nyungwe landscape, a montane rainforest with adjoining farmland in south-west Rwanda. METHODS: Data on bird occurrence, abundance and functional traits were collected in 2017/18 using point counts. We also collected data on habitat and morphological traits for all bird species recorded. We quantified bird diversity using a range of metrics, including the inverse Simpson index, functional dispersion and the standardized effect size of mean nearest taxon distance. RESULTS: In comparison with primary forest areas, even low levels of land use change altered species composition and reduced species diversity. Although overall functional diversity and phylogenetic diversity were similar across land use types, we found a significant contraction of trophic and locomotory trait structures of bird communities in restored areas and cultivated areas, respectively. Soil moisture, elevation and lower vegetation height were major factors influencing taxonomic, functional and phylogenetic dimensions of bird communities, although their effects varied across these dimensions. MAIN CONCLUSIONS: The sensitivity of forest species to minor habitat disturbance emphasizes the value of conserving primary vegetation. Long-term conservation of bird communities in Afromontane ecosystems requires halting wide-scale destruction of primary forest, promoting vegetation heterogeneity in the ecological restoration of degraded habitats and adopting wildlife-friendly agricultural practices. Our results suggest that monitoring and conservation in these landscapes can be refined using taxonomic, functional and phylogenetic diversity metrics to provide complementary information about the current and likely future impacts of land use change.
- Extinction debt on oceanic islandsPublication . Triantis, Kostas A.; Borges, Paulo A. V.; Ladle, Richard J.; Hortal, Joaquín; Cardoso, Pedro; Gaspar, Clara; Dinis, Francisco; Pereira, Enésima; Silveira, Lúcia M. A.; Gabriel, Rosalina; Melo, Catarina; Santos, Ana M. C.; Amorim, Isabel R.; Ribeiro, Sérvio P.; Serrano, Artur R. M.; Quartau, José A.; Whittaker, Robert J.Habitat destruction is the leading cause of species extinctions. However, there is typically a time-lag between the reduction in habitat area and the eventual disappearance of the remnant populations. These “surviving but ultimately doomed” species represent an extinction debt. Calculating the magnitude of such future extinction events has been hampered by potentially inaccurate assumptions about the slope of species–area relationships, which are habitat- and taxon-specific. We overcome this challenge by applying a method that uses the historical sequence of deforestation in the Azorean Islands, to calculate realistic and ecologically-adjusted species–area relationships. The results reveal dramatic and hitherto unrecognized levels of extinction debt, as a result of the extensive destruction of the native forest:>95%, in<600 yr. Our estimations suggest that more than half of the extant forest arthropod species, which have evolved in and are dependent on the native forest, might eventually be driven to extinction. Data on species abundances from Graciosa Island, where only a very small patch of secondary native vegetation still exists, as well as the number of species that have not been found in the last 45 yr, despite the extensive sampling effort, offer support to the predictions made. We argue that immediate action to restore and expand native forest habitat is required to avert the loss of numerous endemic species in the near future.
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