Browsing by Author "Strasberg, Dominique"
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- Collective and harmonized high throughput barcoding of insular arthropod biodiversity: Toward a Genomic Observatories Network for islandsPublication . Emerson, Brent C.; Borges, Paulo A. V.; Cardoso, Pedro; Convey, Peter; deWaard, Jeremy R.; Economo, Evan P.; Gillespie, Rosemary G.; Kennedy, Susan; Krehenwinkel, Henrik; Meier, Rudolf; Roderick, George K.; Strasberg, Dominique; Thébaud, Christophe; Traveset, Anna; Creedy, Thomas J.; Meramveliotakis, Emmanouil; Noguerales, Víctor; Overcast, Isaac; Morlon, Hélène; Papadopoulou, Anna; Vogler, Alfried P.; Arribas, Paula; Andújar, CarmeloABSTRACT: Current understanding of ecological and evolutionary processes underlying island biodiversity is heavily shaped by empirical data from plants and birds, although arthropods comprise the overwhelming majority of known animal species, and as such can provide key insights into processes governing biodiversity. Novel high throughput sequencing (HTS) approaches are now emerging as powerful tools to overcome limitations in the availability of arthropod biodiversity data, and hence provide insights into these processes. Here, we explored how these tools might be most effectively exploited for comprehensive and comparable inventory and monitoring of insular arthropod biodiversity. We first reviewed the strengths, limitations and potential synergies among existing approaches of high throughput barcode sequencing. We considered how this could be complemented with deep learning approaches applied to image analysis to study arthropod biodiversity. We then explored how these approaches could be implemented within the framework of an island Genomic Observatories Network (iGON) for the advancement of fundamental and applied understanding of island biodiversity. To this end, we identified seven island biology themes at the interface of ecology, evolution and conservation biology, within which collective and harmonized efforts in HTS arthropod inventory could yield significant advances in island biodiversity research.
- A combined field survey and molecular identification protocol for comparing forest arthropod biodiversity across spatial scalesPublication . Emerson, Brent C.; Casquet, Juliane; López, Heriberto; Cardoso, Pedro; Borges, Paulo A. V.; Mollaret, Noémy; Oromí, Pedro; Strasberg, Dominique; Thébaud, ChristopheObtaining fundamental biodiversity metrics such as alpha, beta and gamma diversity for arthropods is often complicated by a lack of prior taxonomic information and/or taxonomic expertise, which can result in unreliable morphologically based estimates. We provide a set of standardized ecological and molecular sampling protocols that can be employed by researchers whose taxonomic skills may be limited, and where there may be a lack of robust a priori information regarding the regional pool of species. These protocols combine mass sampling of arthropods, classification of samples into parataxonomic units (PUs) and selective sampling of individuals for mtDNA sequencing to infer biological species. We sampled ten lowland rainforest plots located on the volcanic oceanic island of R eunion (Mascarene archipelago) for spiders, a group with limited taxonomic and distributional data for this region. We classified adults and juveniles into PUs and then demonstrated the reconciliation of these units with presumed biological species using mtDNA sequence data, ecological data and distributional data. Because our species assignment protocol is not reliant upon prior taxonomic information, or taxonomic expertise, it minimizes the problem of the Linnean shortfall to yield diversity estimates that can be directly compared across independent studies. Field sampling can be extended to other arthropod groups and habitats by adapting our field sampling protocol accordingly.
- MtDNA metagenomics reveals large-scale invasion of belowground arthropod communities by introduced speciesPublication . Cicconardi, Francesco; Borges, Paulo A. V.; Strasberg, Dominique; Oromí, Pedro; López, Heriberto; Pérez-Delgado, Antonio J.; Casquet, Juliane; Caujapé-Castells, Juli; Fernández-Palacios, José María; Thébaud, Christophe; Emerson, Brent C.Using a series of standardized sampling plots within forest ecosystems in remote oceanic islands, we reveal fundamental differences between the structuring of aboveground and belowground arthropod biodiversity that are likely due to large-scale species introductions by humans. Species of beetle and spider were sampled almost exclusively from single islands, while soil-dwelling Collembola exhibited more than tenfold higher species sharing among islands. Comparison of Collembola mitochondrial metagenomic data to a database of more than 80 000 Collembola barcode sequences revealed almost 30% of sampled island species are genetically identical, or near identical, to individuals sampled from often very distant geographic regions of the world. Patterns of mtDNA relatedness among Collembola implicate humanmediated species introductions, with minimum estimates for the proportion of introducedspecies on the sampled islands ranging from 45% to 88%. Our results call for more attention to soil mesofauna to understand the global extent and ecological consequences of species introductions.
- Topography-driven isolation, speciation and a global increase of endemism with elevationPublication . Steinbauer, Manuel J.; Field, Richard; Grytnes, John-Arvid; Trigas, Panayiotis; Ah-Peng, Claudine; Attorre, Fabio; Birks, H. John B.; Borges, Paulo A. V.; Cardoso, Pedro; Chou, Chang-Hung; De Sanctis, Michele; Sequeira, Miguel M.; Duarte, Maria C.; Elias, Rui B.; Fernández-Palacios, José María; Gabriel, Rosalina; Gereau, Roy E.; Gillespie, Rosemary G.; Greimler, Josef; Harter, David E. V.; Huang, Tsurng-Juhn; Irl, Severin D. H.; Jeanmonod, Daniel; Jentsch, Anke; Jump, Alistair S.; Kueffer, Christoph; Nogué, Sandra; Otto, Rüdiger; Price, Jonathan; Romeiras, Maria M.; Strasberg, Dominique; Stuessy, Tod; Svenning, Jens-Christian; Vetaas, Ole R.; Beierkuhnlein, CarlAIM: Higher-elevation areas on islands and continental mountains tend to be separated by longer distances, predicting higher endemism at higher elevations; our study is the first to test the generality of the predicted pattern. We also compare it empirically with contrasting expectations from hypotheses invoking higher speciation with area, temperature and species richness. Location Thirty-two insular and 18 continental elevational gradients from around the world. Methods We compiled entire floras with elevation-specific occurrence information, and calculated the proportion of native species that are endemic (‘percent endemism’) in 100-m bands, for each of the 50 elevational gradients. Using generalized linear models, we tested the relationships between percent endemism and elevation, isolation, temperature, area and species richness. RESULTS: Percent endemism consistently increased monotonically with elevation, globally. This was independent of richness–elevation relationships, which had varying shapes but decreased with elevation at high elevations. The endemism–elevation relationships were consistent with isolation-related predictions, but inconsistent with hypotheses related to area, richness and temperature. Main conclusions Higher per-species speciation rates caused by increasing isolation with elevation are the most plausible and parsimonious explanation for the globally consistent pattern of higher endemism at higher elevations that we identify. We suggest that topography-driven isolation increases speciation rates in mountainous areas, across all elevations and increasingly towards the equator. If so, it represents a mechanism that may contribute to generating latitudinal diversity gradients in a way that is consistent with both present-day and palaeontological evidence.