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The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics

2024Journal article Open access
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dc.contributor.authorMc Cartney, Ann M.
dc.contributor.authorFormenti, Giulio
dc.contributor.authorMouton, Alice
dc.contributor.authorDe Panis, Diego
dc.contributor.authorMarins, Luísa S.
dc.contributor.authorLeitão, Henrique G.
dc.contributor.authorDiedericks, Genevieve
dc.contributor.authorKirangwa, Joseph
dc.contributor.authorMorselli, Marco
dc.contributor.authorSalces-Ortiz, Judit
dc.contributor.authorEscudero, Nuria
dc.contributor.authorIannucci, Alessio
dc.contributor.authorNatali, Chiara
dc.contributor.authorSvardal, Hannes
dc.contributor.authorFernández, Rosa
dc.contributor.authorDe Pooter, Tim
dc.contributor.authorJoris, Geert
dc.contributor.authorStrazisar, Mojca
dc.contributor.authorWood, Jonathan M. D.
dc.contributor.authorHerron, Katie E.
dc.contributor.authorSeehausen, Ole
dc.contributor.authorWatts, Phillip C.
dc.contributor.authorShaw, Felix
dc.contributor.authorDavey, Robert P.
dc.contributor.authorMinotto, Alice
dc.contributor.authorFernández, José M.
dc.contributor.authorBöhne, Astrid
dc.contributor.authorAlegria, Carla
dc.contributor.authorAlioto, Tyler
dc.contributor.authorAlves, Paulo C.
dc.contributor.authorAmorim, Isabel R.
dc.contributor.authorAury, Jean-Marc
dc.contributor.authorBackstrom, Niclas
dc.contributor.authorBaldrian, Petr
dc.contributor.authorBaltrunaite, Laima
dc.contributor.authorBarta, Endre
dc.contributor.authorBedHom, Bertrand
dc.contributor.authorBelser, Caroline
dc.contributor.authorBergsten, Johannes
dc.contributor.authorBertrand, Laurie
dc.contributor.authorBilandija, Helena
dc.contributor.authorBinzer-Panchal, Mahesh
dc.contributor.authorBista, Iliana
dc.contributor.authorBlaxter, Mark
dc.contributor.authorBorges, Paulo A. V.
dc.contributor.authorDias, Guilherme Borges
dc.contributor.authorBosse, Mirte
dc.contributor.authorBrown, Tom
dc.contributor.authorBruggmann, Rémy
dc.contributor.authorBuena-Atienza, Elena
dc.contributor.authorBurgin, Josephine
dc.contributor.authorBuzan, Elena
dc.contributor.authorCariani, Alessia
dc.contributor.authorCasadei, Nicolas
dc.contributor.authorChiara, Matteo
dc.contributor.authorChozas, Sergio
dc.contributor.authorČiampor, Fedor
dc.contributor.authorCrottini, Angelica
dc.contributor.authorCruaud, Corinne
dc.contributor.authorCruz, Fernando
dc.contributor.authorDalen, Love
dc.contributor.authorDe Biase, Alessio
dc.contributor.authordel Campo, Javier
dc.contributor.authorDelic, Teo
dc.contributor.authorDennis, Alice B.
dc.contributor.authorDerks, Martijn F. L.
dc.contributor.authorDiroma, Maria Angela
dc.contributor.authorDjan, Mihajla
dc.contributor.authorDuprat, Simone
dc.contributor.authorEleftheriadi, Klara
dc.contributor.authorFeulner, Philine G. D.
dc.contributor.authorFlot, Jean-François
dc.contributor.authorForni, Giobbe
dc.contributor.authorFosso, Bruno
dc.contributor.authorFournier, Pascal
dc.contributor.authorFournier-Chambrillon, Christine
dc.contributor.authorGabaldon, Toni
dc.contributor.authorGarg, Shilpa
dc.contributor.authorGissi, Carmela
dc.contributor.authorGiupponi, Luca
dc.contributor.authorGomez-Garrido, Jessica
dc.contributor.authorGonzález, Josefa
dc.contributor.authorGrilo, Miguel L.
dc.contributor.authorGrüning, Björn
dc.contributor.authorGuerin, Thomas
dc.contributor.authorGuiglielmoni, Nadege
dc.contributor.authorGut, Marta
dc.contributor.authorHaesler, Marcel P.
dc.contributor.authorHahn, Christoph
dc.contributor.authorHalpern, Balint
dc.contributor.authorHarrison, Peter W.
dc.contributor.authorHeintz, Julia
dc.contributor.authorHindrikson, Maris
dc.contributor.authorHöglund, Jacob
dc.contributor.authorHowe, Kerstin
dc.contributor.authorHughes, Graham M.
dc.contributor.authorIstace, Benjamin
dc.contributor.authorCock, Mark J.
dc.contributor.authorJanžekovič, Franc
dc.contributor.authorJonsson, Zophonias O.
dc.contributor.authorJoye-Dind, Sagane
dc.contributor.authorKoskimäki, Janne J.
dc.contributor.authorKrystufek, Boris
dc.contributor.authorKubacka, Justyna
dc.contributor.authorKuhl, Heiner
dc.contributor.authorKusza, Szilvia
dc.contributor.authorLabadie, Karine
dc.contributor.authorLähteenaro, Meri
dc.contributor.authorLantz, Henrik
dc.contributor.authorLavrinienko, Anton
dc.contributor.authorLeclère, Lucas
dc.contributor.authorLopes, Ricardo Jorge
dc.contributor.authorMadsen, Ole
dc.contributor.authorMagdelenat, Ghislaine
dc.contributor.authorMagoga, Giulia
dc.contributor.authorManousaki, Tereza
dc.contributor.authorMappes, Tapio
dc.contributor.authorMarques, Joao Pedro
dc.contributor.authorRedondo, Gemma I. Martinez
dc.contributor.authorMaumus, Florian
dc.contributor.authorMcCarthy, Shane A.
dc.contributor.authorMegens, Hendrik-Jan
dc.contributor.authorMelo-Ferreira, Jose
dc.contributor.authorMendes, Sofia L.
dc.contributor.authorMontagna, Matteo
dc.contributor.authorMoreno, Joao
dc.contributor.authorMosbech, Mai-Britt
dc.contributor.authorMoura, Mónica
dc.contributor.authorMusilova, Zuzana
dc.contributor.authorMyers, Eugene
dc.contributor.authorNash, Will J.
dc.contributor.authorNater, Alexander
dc.contributor.authorNicholson, Pamela
dc.contributor.authorNiell, Manuel
dc.contributor.authorNijland, Reindert
dc.contributor.authorNoel, Benjamin
dc.contributor.authorNoren, Karin
dc.contributor.authorOliveira, Pedro H.
dc.contributor.authorOlsen, Remi-Andre
dc.contributor.authorOmetto, Lino
dc.contributor.authorOomen, Rebekah A.
dc.contributor.authorOssowski, Stephan
dc.contributor.authorPalinauskas, Vaidas
dc.contributor.authorPalsson, Snaebjorn
dc.contributor.authorPanibe, Jerome P.
dc.contributor.authorPauperio, Joana
dc.contributor.authorPavlek, Martina
dc.contributor.authorPayen, Emilie
dc.contributor.authorPawlowska, Julia
dc.contributor.authorPellicer, Jaume
dc.contributor.authorPesole, Graziano
dc.contributor.authorPimenta, Joao
dc.contributor.authorPippel, Martin
dc.contributor.authorPirttilä, Anna Maria
dc.contributor.authorPoulakakis, Nikos
dc.contributor.authorRajan, Jeena
dc.contributor.authorM.C. Rego, Rúben
dc.contributor.authorResendes, Roberto
dc.contributor.authorResl, Philipp
dc.contributor.authorRiesgo, Ana
dc.contributor.authorRodin-Morch, Patrik
dc.contributor.authorSoares, Andre E. R.
dc.contributor.authorFernandes, Carlos Rodriguez
dc.contributor.authorRomeiras, Maria M.
dc.contributor.authorRoxo, Guilherme
dc.contributor.authorRüber, Lukas
dc.contributor.authorRuiz-Lopez, Maria Jose
dc.contributor.authorSaarma, Urmas
dc.contributor.authorda Silva, Luis P.
dc.contributor.authorSim-Sim, Manuela
dc.contributor.authorSoler, Lucile
dc.contributor.authorSousa, Vitor C.
dc.contributor.authorSantos, Carla Sousa
dc.contributor.authorSpada, Alberto
dc.contributor.authorStefanovic, Milomir
dc.contributor.authorSteger, Viktor
dc.contributor.authorStiller, Josefin
dc.contributor.authorStöck, Matthias
dc.contributor.authorStruck, Torsten H.
dc.contributor.authorSudasinghe, Hiranya
dc.contributor.authorTapanainen, Riikka
dc.contributor.authorTellgren-Roth, Christian
dc.contributor.authorTrindade, Helena
dc.contributor.authorTukalenko, Yevhen
dc.contributor.authorUrso, Ilenia
dc.contributor.authorVacherie, Benoit
dc.contributor.authorVan Belleghem, Steven M.
dc.contributor.authorVan Oers, Kees
dc.contributor.authorVargas-Chavez, Carlos
dc.contributor.authorVelickovic, Nevena
dc.contributor.authorVella, Noel
dc.contributor.authorVella, Adriana
dc.contributor.authorVernesi, Cristiano
dc.contributor.authorVicente, Sara
dc.contributor.authorVilla, Sara
dc.contributor.authorPettersson, Olga Vinnere
dc.contributor.authorVolckaert, Filip A. M.
dc.contributor.authorVoros, Judit
dc.contributor.authorWincker, Patrick
dc.contributor.authorWinkler, Sylke
dc.contributor.authorCiofi, Claudio
dc.contributor.authorWaterhouse, Robert M.
dc.contributor.authorMazzoni, Camila J.
dc.date.accessioned2024-10-25T10:14:38Z
dc.date.available2024-10-25T10:14:38Z
dc.date.issued2024
dc.description.abstractA genomic database of all Earth’s eukaryotic species could contribute to many scientific discoveries; however, only a tiny fraction of species have genomic information available. In 2018, scientists across the world united under the Earth BioGenome Project (EBP), aiming to produce a database of high-quality reference genomes containing all ~1.5 million recognized eukaryotic species. As the European node of the EBP, the European Reference Genome Atlas (ERGA) sought to implement a new decentralised, equitable and inclusive model for producing reference genomes. For this, ERGA launched a Pilot Project establishing the first distributed reference genome production infrastructure and testing it on 98 eukaryotic species from 33 European countries. Here we outline the infrastructure and explore its effectiveness for scaling high-quality reference genome production, whilst considering equity and inclusion. The outcomes and lessons learned provide a solid foundation for ERGA while offering key learnings to other transnational, national genomic resource projects and the EBP.pt_PT
dc.description.versioninfo:eu-repo/semantics/publishedVersionpt_PT
dc.identifier.citationMacCartney, A. M., Formenti, G., Amorim, I. R., Mazzoni, C. J., & Borges, P. A. V.... et al. (2024). The European Reference Genome Atlas: Piloting a decentralised approach to equitable biodiversity genomics. "npj Biodiversity", 3, 28. DOI:10.1038/s44185-024-00054-6pt_PT
dc.identifier.doi10.1038/s44185-024-00054-6pt_PT
dc.identifier.eissn2731-4243
dc.identifier.urihttp://hdl.handle.net/10400.3/7175
dc.language.isoengpt_PT
dc.peerreviewedyespt_PT
dc.publisherSpringer Science and Business Media LLCpt_PT
dc.relation.publisherversionhttps://www.nature.com/articles/s44185-024-00054-6pt_PT
dc.rights.urihttp://creativecommons.org/licenses/by/4.0/pt_PT
dc.titleThe European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomicspt_PT
dc.typejournal article
dspace.entity.typePublication
oaire.citation.endPage17pt_PT
oaire.citation.issue1pt_PT
oaire.citation.startPage1pt_PT
oaire.citation.titlenpj Biodiversitypt_PT
oaire.citation.volume3pt_PT
person.familyNameBorges
person.givenNamePaulo
person.identifier829215
person.identifier.ciencia-idFA1A-C9CB-9C29
person.identifier.orcid0000-0002-8448-7623
person.identifier.ridB-2780-2008
person.identifier.scopus-author-id7003533390
rcaap.rightsopenAccesspt_PT
rcaap.typearticlept_PT
relation.isAuthorOfPublicationd9716a90-cc3e-44d0-adc1-6933e3786278
relation.isAuthorOfPublication.latestForDiscoveryd9716a90-cc3e-44d0-adc1-6933e3786278

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