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- Vascular plant taxa occurrences in exotic woodland and in natural and production forests on the Islands of São Miguel, Terceira and Pico (Azores)Publication . Silva, Lurdes; Madeira, Patricia; Pavão, Diogo C.; Elias, R.B.; Moura, Monica; Silva, LuísThe data presented here originated from field expeditions carried out between 2017 and 2018, within the framework of Forest-Eco2 project: "Towards an Ecological and Economic valorisation of the Azorean Forest". The project aimed to quantify the ecological value of the Azorean forests, including carbon accumulation and to design and propose measures that could further enhance forest sustainability. For that, 90 forest plots were sampled on three Azores islands - São Miguel, Terceira and Pico - equally distributed into natural forest, exotic woodland and production forest. The aim of this report is to further expand knowledge on biodiversity trends enclosed in the different forest types present in the Azores, by providing a list of the occurrences of the 105 different vascular plant taxa together with a brief characterisation of their origin and life-form.
- The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics.Publication . Mc Cartney, Ann M.; Formenti, Giulio; Mouton, Alice; De Panis, Diego; Marins, Luísa S; Leitão, Henrique; Diedericks, Genevieve; KIRANGWA, JOSEPH; Morselli, Marco; Salces-Ortiz, J; Escudero, Nuria; Iannucci, Alessio; Natali, Chiara; Svardal, Hannes; Fernández, Rosa; De Pooter, Tim; Joris, Geert; Strazisar, Mojca; Wood, Jo; Herron, Katie E.; Seehausen, Ole; Watts, Phillip; Shaw, Felix; Davey, Robert P; Minotto, Alice; Fernández, José M; Böhne, Astrid; Alegria, C.; Alioto, Tyler; Alves, Paulo C; Amorim, Isabel R.; AURY, Jean-Marc; Backstrom, Niclas; Baldrian, Petr; Baltrunaite, Laima; Barta, Endre; Bed'Hom, Bertrand; Belser, Caroline; Bergsten, Johannes; Bertrand, Laurie; Bilandzija, Helena; Binzer-Panchal, Mahesh; Bista, Iliana; Blaxter, Mark; Borges, Paulo A. V.; Borges Dias, Guilherme; Bosse, Mirte; Brown, Tom; Bruggmann, Rémy; Buena-Atienza, Elena; Burgin, Josephine; Buzan, Elena; Casadei, Nicolas Lougi Pascal; CHIARA, MATTEO; Chozas, Sergio; Čiampor, Fedor; Crottini, Angelica; C., Cruaud; Cruz, Fernando; Dalén, Love; DE BIASE, Alessio; Campo, Javier Del; Delić, Teo; Dennis, Alice B; Derks, Martijn FL; Diroma, Maria Angela; Djan, Mihajla; Duprat, Simone; Eleftheriadi, Klara; Feulner, Philine GD; Flot, Jean-François; Forni, Giobbe; Fosso, Bruno; Fournier, Pascal; FOURNIER-CHAMBRILON, Christine; Gabaldón, Toni; Garg, Shilpa; Gissi, Carmela; Giupponi, Luca; Gómez-Garrido, Jèssica; Gonzalez, Josefa; Grilo, Miguel; Gruening, Bjoern; Guérin, Thomas; Guiglielmoni, Nadège; Gut, Marta; Haesler, Marcel P; Hahn, Christoph; Halpern, Balint; Harrison, Peter; Heintz, Julia; Hindrikson, Maris; Höglund, Jacob; Howe, Kerstin; Hughes, Graham; Istace, Benjamin; Cock, Mark J.; Jancekovic, Franc; Jónsson, Zophonías O; Joye-Dind, Sagane; Koskimaki, Janne J.; Krystufek, Boris; Kubacka, Justyna; Kuhl, Heiner; Kusza, Szilvia; Labadie, Karine; Lahteenaro, Meri; Lantz, Henrik; Lavrinienko, Anton; Leclere, Lucas; Lopes, Ricardo Jorge; Madsen, Ole; Magdelenat, Ghislaine; MAGOGA, GIULIA; Manousaki, Tereza; Mappes, Tapio; Marques, João Pedro; Martinez Redondo, Gemma I; Maumus, Florian; Megens, Hendrik-Jan; Melo-Ferreira, José; Mendes, Sofia L; Montagna, Matteo; Moreno, João; Mosbech, Mai-Britt; Moura, Monica; Musilova, Zuzana; Myers, Eugene; Nash, Will J.; Nater, Alexander; Nicholson, Pamela; Niell, Manuel; Nijland, Reindert; Noel, Benjamin; Norén, Karin; Oliveira, Pedro H; Olsen, Remi-André; Ometto, Lino; Ossowski, Stephan; Palinauskas, Vaidas; Pálsson, Snæbjörn; Panibe, Jerome P; Paupério, Joana; Pavlek, Martina; PAYEN, Emilie; Pawłowska, Julia; Pellicer, Jaume; Pesole, Graziano; Pimenta, João; Pippel, Martin; Pirttilä, Anna Maria; Poulakakis, Nikos; Rajan, Jeena; Rego, Ruben MC; Resendes, Roberto; Resl, Philipp; Riesgo, Ana; Rödin-Mörch, Patrik; Soares, André ER; Fernandes, Carlos; Romeiras, Maria M.; Roxo, Guilherme; Rüber, Lukas; Ruiz-López, María José; Saarma, Urmas; Silva, Luís; Sim-Sim, Manuela; Soler, Lucile; Sousa, Vitor C; Sousa-Santos, C.; Spada, Alberto; Stefanovic, Milomir; Steger, Viktor; Stiller, Josefin; Stöck, Matthias; Struck, Torsten Hugo H; Sudasinghe, Hiranya; Tapanainen, Riikka; Tellgren-Roth, Christian; Trindade, Helena; Tukalenko, Yevhen; Urso, Ilenia; Vacherie, Benoit; Van Belleghem, Steven M; Van Oers, Kees; Vargas-Chavez, Carlos; Velickovic, Nevena; Vella, Noel; Vella, Adriana; Vernesi, Cristiano; Vicente, Sara; Villa, Sara; Vinnere Pettersson, Olga; Volckaert, Filip AM; Vörös, Judit; Wincker, Patrick; Winkler, Sylke; CIOFI, CLAUDIO; Waterhouse, Robert M; Mazzoni, Camila J.ABSTRACT: A global genome database of all of Earth’s species diversity could be a treasure trove of scientific discoveries. However, regardless of the major advances in genome sequencing technologies, only a tiny fraction of species have genomic information available. To contribute to a more complete planetary genomic database, scientists and institutions across the world have united under the Earth BioGenome Project (EBP), which plans to sequence and assemble high-quality reference genomes for all ∼1.5 million recognized eukaryotic species through a stepwise phased approach. As the initiative transitions into Phase II, where 150,000 species are to be sequenced in just four years, worldwide participation in the project will be fundamental to success. As the European node of the EBP, the European Reference Genome Atlas (ERGA) seeks to implement a new decentralised, accessible, equitable and inclusive model for producing high-quality reference genomes, which will inform EBP as it scales. To embark on this mission, ERGA launched a Pilot Project to establish a network across Europe to develop and test the first infrastructure of its kind for the coordinated and distributed reference genome production on 98 European eukaryotic species from sample providers across 33 European countries. Here we outline the process and challenges faced during the development of a pilot infrastructure for the production of reference genome resources, and explore the effectiveness of this approach in terms of high-quality reference genome production, considering also equity and inclusion. The outcomes and lessons learned during this pilot provide a solid foundation for ERGA while offering key learnings to other transnational and national genomic resource projects.