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The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics.

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dc.contributor.authorMc Cartney, Ann M.
dc.contributor.authorFormenti, Giulio
dc.contributor.authorMouton, Alice
dc.contributor.authorDe Panis, Diego
dc.contributor.authorMarins, Luísa S
dc.contributor.authorLeitão, Henrique
dc.contributor.authorDiedericks, Genevieve
dc.contributor.authorKIRANGWA, JOSEPH
dc.contributor.authorMorselli, Marco
dc.contributor.authorSalces-Ortiz, J
dc.contributor.authorEscudero, Nuria
dc.contributor.authorIannucci, Alessio
dc.contributor.authorNatali, Chiara
dc.contributor.authorSvardal, Hannes
dc.contributor.authorFernández, Rosa
dc.contributor.authorDe Pooter, Tim
dc.contributor.authorJoris, Geert
dc.contributor.authorStrazisar, Mojca
dc.contributor.authorWood, Jo
dc.contributor.authorHerron, Katie E.
dc.contributor.authorSeehausen, Ole
dc.contributor.authorWatts, Phillip
dc.contributor.authorShaw, Felix
dc.contributor.authorDavey, Robert P
dc.contributor.authorMinotto, Alice
dc.contributor.authorFernández, José M
dc.contributor.authorBöhne, Astrid
dc.contributor.authorAlegria, C.
dc.contributor.authorAlioto, Tyler
dc.contributor.authorAlves, Paulo C
dc.contributor.authorAmorim, Isabel R.
dc.contributor.authorAURY, Jean-Marc
dc.contributor.authorBackstrom, Niclas
dc.contributor.authorBaldrian, Petr
dc.contributor.authorBaltrunaite, Laima
dc.contributor.authorBarta, Endre
dc.contributor.authorBed'Hom, Bertrand
dc.contributor.authorBelser, Caroline
dc.contributor.authorBergsten, Johannes
dc.contributor.authorBertrand, Laurie
dc.contributor.authorBilandzija, Helena
dc.contributor.authorBinzer-Panchal, Mahesh
dc.contributor.authorBista, Iliana
dc.contributor.authorBlaxter, Mark
dc.contributor.authorBorges, Paulo A. V.
dc.contributor.authorBorges Dias, Guilherme
dc.contributor.authorBosse, Mirte
dc.contributor.authorBrown, Tom
dc.contributor.authorBruggmann, Rémy
dc.contributor.authorBuena-Atienza, Elena
dc.contributor.authorBurgin, Josephine
dc.contributor.authorBuzan, Elena
dc.contributor.authorCasadei, Nicolas Lougi Pascal
dc.contributor.authorCHIARA, MATTEO
dc.contributor.authorChozas, Sergio
dc.contributor.authorČiampor, Fedor
dc.contributor.authorCrottini, Angelica
dc.contributor.authorC., Cruaud
dc.contributor.authorCruz, Fernando
dc.contributor.authorDalén, Love
dc.contributor.authorDE BIASE, Alessio
dc.contributor.authorCampo, Javier Del
dc.contributor.authorDelić, Teo
dc.contributor.authorDennis, Alice B
dc.contributor.authorDerks, Martijn FL
dc.contributor.authorDiroma, Maria Angela
dc.contributor.authorDjan, Mihajla
dc.contributor.authorDuprat, Simone
dc.contributor.authorEleftheriadi, Klara
dc.contributor.authorFeulner, Philine GD
dc.contributor.authorFlot, Jean-François
dc.contributor.authorForni, Giobbe
dc.contributor.authorFosso, Bruno
dc.contributor.authorFournier, Pascal
dc.contributor.authorFOURNIER-CHAMBRILON, Christine
dc.contributor.authorGabaldón, Toni
dc.contributor.authorGarg, Shilpa
dc.contributor.authorGissi, Carmela
dc.contributor.authorGiupponi, Luca
dc.contributor.authorGómez-Garrido, Jèssica
dc.contributor.authorGonzalez, Josefa
dc.contributor.authorGrilo, Miguel
dc.contributor.authorGruening, Bjoern
dc.contributor.authorGuérin, Thomas
dc.contributor.authorGuiglielmoni, Nadège
dc.contributor.authorGut, Marta
dc.contributor.authorHaesler, Marcel P
dc.contributor.authorHahn, Christoph
dc.contributor.authorHalpern, Balint
dc.contributor.authorHarrison, Peter
dc.contributor.authorHeintz, Julia
dc.contributor.authorHindrikson, Maris
dc.contributor.authorHöglund, Jacob
dc.contributor.authorHowe, Kerstin
dc.contributor.authorHughes, Graham
dc.contributor.authorIstace, Benjamin
dc.contributor.authorCock, Mark J.
dc.contributor.authorJancekovic, Franc
dc.contributor.authorJónsson, Zophonías O
dc.contributor.authorJoye-Dind, Sagane
dc.contributor.authorKoskimaki, Janne J.
dc.contributor.authorKrystufek, Boris
dc.contributor.authorKubacka, Justyna
dc.contributor.authorKuhl, Heiner
dc.contributor.authorKusza, Szilvia
dc.contributor.authorLabadie, Karine
dc.contributor.authorLahteenaro, Meri
dc.contributor.authorLantz, Henrik
dc.contributor.authorLavrinienko, Anton
dc.contributor.authorLeclere, Lucas
dc.contributor.authorLopes, Ricardo Jorge
dc.contributor.authorMadsen, Ole
dc.contributor.authorMagdelenat, Ghislaine
dc.contributor.authorMAGOGA, GIULIA
dc.contributor.authorManousaki, Tereza
dc.contributor.authorMappes, Tapio
dc.contributor.authorMarques, João Pedro
dc.contributor.authorMartinez Redondo, Gemma I
dc.contributor.authorMaumus, Florian
dc.contributor.authorMegens, Hendrik-Jan
dc.contributor.authorMelo-Ferreira, José
dc.contributor.authorMendes, Sofia L
dc.contributor.authorMontagna, Matteo
dc.contributor.authorMoreno, João
dc.contributor.authorMosbech, Mai-Britt
dc.contributor.authorMoura, Monica
dc.contributor.authorMusilova, Zuzana
dc.contributor.authorMyers, Eugene
dc.contributor.authorNash, Will J.
dc.contributor.authorNater, Alexander
dc.contributor.authorNicholson, Pamela
dc.contributor.authorNiell, Manuel
dc.contributor.authorNijland, Reindert
dc.contributor.authorNoel, Benjamin
dc.contributor.authorNorén, Karin
dc.contributor.authorOliveira, Pedro H
dc.contributor.authorOlsen, Remi-André
dc.contributor.authorOmetto, Lino
dc.contributor.authorOssowski, Stephan
dc.contributor.authorPalinauskas, Vaidas
dc.contributor.authorPálsson, Snæbjörn
dc.contributor.authorPanibe, Jerome P
dc.contributor.authorPaupério, Joana
dc.contributor.authorPavlek, Martina
dc.contributor.authorPAYEN, Emilie
dc.contributor.authorPawłowska, Julia
dc.contributor.authorPellicer, Jaume
dc.contributor.authorPesole, Graziano
dc.contributor.authorPimenta, João
dc.contributor.authorPippel, Martin
dc.contributor.authorPirttilä, Anna Maria
dc.contributor.authorPoulakakis, Nikos
dc.contributor.authorRajan, Jeena
dc.contributor.authorRego, Ruben MC
dc.contributor.authorResendes, Roberto
dc.contributor.authorResl, Philipp
dc.contributor.authorRiesgo, Ana
dc.contributor.authorRödin-Mörch, Patrik
dc.contributor.authorSoares, André ER
dc.contributor.authorFernandes, Carlos
dc.contributor.authorRomeiras, Maria M.
dc.contributor.authorRoxo, Guilherme
dc.contributor.authorRüber, Lukas
dc.contributor.authorRuiz-López, María José
dc.contributor.authorSaarma, Urmas
dc.contributor.authorSilva, Luís
dc.contributor.authorSim-Sim, Manuela
dc.contributor.authorSoler, Lucile
dc.contributor.authorSousa, Vitor C
dc.contributor.authorSousa-Santos, C.
dc.contributor.authorSpada, Alberto
dc.contributor.authorStefanovic, Milomir
dc.contributor.authorSteger, Viktor
dc.contributor.authorStiller, Josefin
dc.contributor.authorStöck, Matthias
dc.contributor.authorStruck, Torsten Hugo H
dc.contributor.authorSudasinghe, Hiranya
dc.contributor.authorTapanainen, Riikka
dc.contributor.authorTellgren-Roth, Christian
dc.contributor.authorTrindade, Helena
dc.contributor.authorTukalenko, Yevhen
dc.contributor.authorUrso, Ilenia
dc.contributor.authorVacherie, Benoit
dc.contributor.authorVan Belleghem, Steven M
dc.contributor.authorVan Oers, Kees
dc.contributor.authorVargas-Chavez, Carlos
dc.contributor.authorVelickovic, Nevena
dc.contributor.authorVella, Noel
dc.contributor.authorVella, Adriana
dc.contributor.authorVernesi, Cristiano
dc.contributor.authorVicente, Sara
dc.contributor.authorVilla, Sara
dc.contributor.authorVinnere Pettersson, Olga
dc.contributor.authorVolckaert, Filip AM
dc.contributor.authorVörös, Judit
dc.contributor.authorWincker, Patrick
dc.contributor.authorWinkler, Sylke
dc.contributor.authorCIOFI, CLAUDIO
dc.contributor.authorWaterhouse, Robert M
dc.contributor.authorMazzoni, Camila J.
dc.date.accessioned2024-01-19T11:33:08Z
dc.date.available2024-01-19T11:33:08Z
dc.date.issued2023
dc.description.abstractABSTRACT: A global genome database of all of Earth’s species diversity could be a treasure trove of scientific discoveries. However, regardless of the major advances in genome sequencing technologies, only a tiny fraction of species have genomic information available. To contribute to a more complete planetary genomic database, scientists and institutions across the world have united under the Earth BioGenome Project (EBP), which plans to sequence and assemble high-quality reference genomes for all ∼1.5 million recognized eukaryotic species through a stepwise phased approach. As the initiative transitions into Phase II, where 150,000 species are to be sequenced in just four years, worldwide participation in the project will be fundamental to success. As the European node of the EBP, the European Reference Genome Atlas (ERGA) seeks to implement a new decentralised, accessible, equitable and inclusive model for producing high-quality reference genomes, which will inform EBP as it scales. To embark on this mission, ERGA launched a Pilot Project to establish a network across Europe to develop and test the first infrastructure of its kind for the coordinated and distributed reference genome production on 98 European eukaryotic species from sample providers across 33 European countries. Here we outline the process and challenges faced during the development of a pilot infrastructure for the production of reference genome resources, and explore the effectiveness of this approach in terms of high-quality reference genome production, considering also equity and inclusion. The outcomes and lessons learned during this pilot provide a solid foundation for ERGA while offering key learnings to other transnational and national genomic resource projects.pt_PT
dc.description.versioninfo:eu-repo/semantics/publishedVersionpt_PT
dc.identifier.citationMc Cartney, A. M., Formenti, G., Mouton, A., De Panis, D., Marins, L. S., Leitão, H. G. … Mazzoni, C. (2023). The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics. bioRxiv, 2023-09.pt_PT
dc.identifier.doi10.1101/2023.09.25.559365pt_PT
dc.identifier.urihttp://hdl.handle.net/10400.3/6875
dc.language.isoengpt_PT
dc.peerreviewedyespt_PT
dc.rights.urihttp://creativecommons.org/licenses/by/4.0/pt_PT
dc.subjectBiodiversitypt_PT
dc.subjectGenómicapt_PT
dc.titleThe European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics.pt_PT
dc.typeother
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oaire.citation.endPage51pt_PT
oaire.citation.startPage1pt_PT
oaire.citation.titlebioRxivpt_PT
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