Browsing by Author "Wayman, Joseph P."
Now showing 1 - 9 of 9
Results Per Page
Sort Options
- Assessing taxonomic and functional change in British breeding bird assemblages over timePublication . Wayman, Joseph P.; Sadler, Jonathan P.; Pugh, Thomas A. M.; Martin, Thomas E.; Tobias, Joseph A.; Matthews, Thomas J.AIM: The aim was to identify the primary drivers of compositional change in breeding bird assemblages over a 40-year period. LOCATION: Britain. TIME PERIOD: From 1970 to 2010. MAJOR TAXA STUDIED: Birds. METHODS: Using morphological trait measurements and a dataset of presence-absence data for British breeding birds surveyed in 10 km × 10 km hectads during two time periods, we calculated temporal taxonomic and functional beta diversity for each hectad alongside the change in species richness, mean nearest taxon distance (MNTD) and mean pairwise distance (MPD). We also estimated potential drivers of beta diversity, including climatic and land-use and land-cover (LULC) change variables, elevation and assemblage species richness in 1970 (1970rich). We used random forest regressions to test which variables best explained compositional change in the assemblages. We also assessed spatial taxonomic and functional change by analysing multiple-site beta diversity and pairwise dissimilarities between time periods. RESULTS: Initial (1970) species richness was the most important predictor (highest importance score) across all models, with areas characterized by higher initial richness experiencing less assemblage change overall. The coordinates included to capture spatial autocorrelation in the data were also important predictors of change. Most cli-mate and LULC variables had relatively low explanatory power; elevation and average temperature were the most influential. All metrics increased slightly with increasing elevation, except for species richness change and MPD, which decreased. MAIN CONCLUSIONS: The composition of British breeding bird assemblages changed substantially between 1970 and 2010. Spatial heterogeneity increased, both taxonomically and functionally. We show evidence that hectads with larger assemblages have been buffered from temporal diversity change and that those at higher elevations changed more in composition than those at lower elevations. Overall, coarse-resolution climate and LULC explained only small to moderate amounts of variation, suggesting that stochastic assembly change or finer-scale drivers might be drivers of temporal changes in assemblage composition.
- AVOTREX: A Global Dataset of Extinct Birds and Their TraitsPublication . Sayol, Ferran; Wayman, Joseph P.; Dufour, Paul; Martin, Thomas E.; Hume, Julian P.; Jørgensen, Maria Wagner; Martínez‐Rubio, Natàlia; Sanglas, Ariadna; Soares, Filipa C.; Cooke, Rob; Mendenhall, Chase D.; Margolis, Jay R.; Illera, Juan Carlos; Lemoine, Rhys; Benavides, Eva; Lapiedra, Oriol; Triantis, Kostas A.; Pigot, Alex L.; Tobias, Joseph A.; Faurby, Søren; Matthews, Thomas J.Motivation Human activities have been reshaping the natural world for tens of thousands of years, leading to the extinction of hundreds of bird species. Past research has provided evidence of extinction selectivity towards certain groups of species, but trait information is lacking for the majority of clades, especially for prehistoric extinctions identified only through subfossil remains. This incomplete knowledge potentially obscures the structure of natural communities, undermining our ability to infer changes in biodiversity across space and time, including trends in functional and phylogenetic diversity. Biases in currently available trait data also limit our ability to identify drivers and processes of extinction. Here we present AVOTREX, an open-access database of species traits for all birds known to have gone extinct in the last 130,000 years. This database provides detailed morphological information for 610 extinct species, along with a pipeline to build phylogenetic trees that include these extinct species. Main Types of Variables Contained For each extinct bird species, we provide information on the taxonomy, geographic location, and period of extinction. We also present data on island endemicity, flight ability, and body mass, as well as standard measurements of external (matching the AVONET database of extant birds) and skeletal morphology from museum specimens where available. To ensure comprehensive morphological data coverage, we estimate all missing morphological measurements using a data imputation technique based on machine learning. Finally, we provide an R package to graft all extinct species onto a global phylogeny of extant species (BirdTree).
- Biological knowledge shortfalls impede conservation efforts in poorly studied taxa—A case study of LaboulbeniomycetesPublication . Haelewaters, Danny; Matthews, Thomas J.; Wayman, Joseph P.; CAZABONNE, Jonathan; Heyman, Felix; Quandt, C. Alisha; Martin, Thomas EABSTRACT: Most empirical research on biological shortfalls has focused on vertebrate taxa. This is important given many species in poorly studied groups such as invertebrates, plants, and fungi are predicted to possess high conservation risk. Here, we focus on Laboulbeniomycetes: a class of microfungi that are understudied. We examined four shortfalls: Linnean (knowledge gaps in species diversity), Wallacean (knowledge gaps in distributions), Latimerian (knowledge gaps in species persistence), and the newly introduced Scottian (knowledge gaps in species conservation assessments) shortfalls. The Linnean shortfall in Laboulbeniomycetes is hard to predict due to inconsistent spe-cies description rates. Analysis of distribution patterns indicates Laboulbeniomycetes are likely to experience an extremely high Wallacean shortfall, with many species hav-ing highly disjunct known distributions. Latimerian shortfall analysis shows over half (51%) of Laboulbeniomycetes have not been recorded in >50 years, while the group has a collective Scottian shortfall of 100%, given none of the 2454 described species have received an IUCN threat assessment. We suggest continued study of natural his-tory collections, expanded citizen science programmes, and machine- learning iden-tification approaches as important tools for reducing knowledge shortfalls in both Laboulbeniomycetes and poorly studied taxa more generally.
- Effects of land‐use change on avian taxonomic, functional and phylogenetic diversity in a tropical montane rainforestPublication . Rurangwa, Marie Laure; Aguirre‐Gutiérrez, Jesús; Matthews, Thomas J.; Niyigaba, Protais; Wayman, Joseph P.; Tobias, Joseph A.; Whittaker, Robert J.AIM: Although land use change is a leading cause of biodiversity loss worldwide, there is scant information on the extent to which it has affected the structure and composition of bird communities in the Afrotropical region. This study aimed to quantify the effects of habitat transformation on taxonomic, functional and phylogenetic diversity in Afrotropical bird communities. LOCATION: Nyungwe landscape, a montane rainforest with adjoining farmland in south-west Rwanda. METHODS: Data on bird occurrence, abundance and functional traits were collected in 2017/18 using point counts. We also collected data on habitat and morphological traits for all bird species recorded. We quantified bird diversity using a range of metrics, including the inverse Simpson index, functional dispersion and the standardized effect size of mean nearest taxon distance. RESULTS: In comparison with primary forest areas, even low levels of land use change altered species composition and reduced species diversity. Although overall functional diversity and phylogenetic diversity were similar across land use types, we found a significant contraction of trophic and locomotory trait structures of bird communities in restored areas and cultivated areas, respectively. Soil moisture, elevation and lower vegetation height were major factors influencing taxonomic, functional and phylogenetic dimensions of bird communities, although their effects varied across these dimensions. MAIN CONCLUSIONS: The sensitivity of forest species to minor habitat disturbance emphasizes the value of conserving primary vegetation. Long-term conservation of bird communities in Afromontane ecosystems requires halting wide-scale destruction of primary forest, promoting vegetation heterogeneity in the ecological restoration of degraded habitats and adopting wildlife-friendly agricultural practices. Our results suggest that monitoring and conservation in these landscapes can be refined using taxonomic, functional and phylogenetic diversity metrics to provide complementary information about the current and likely future impacts of land use change.
- A global analysis of avian island diversity–area relationships in the AnthropocenePublication . Matthews, Thomas J.; Wayman, Joseph P.; Whittaker, Robert J.; Cardoso, Pedro; Hume, Julian P.; Sayol, Ferran; Proios, Konstantinos; Martin, Thomas E.; Baiser, Benjamin; Borges, Paulo A. V.; Kubota, Yasuhiro; dos Anjos, Luiz; Tobias, Joseph; Soares, Filipa C.; Si, Xingfeng; Ding, Ping; Mendenhall, Chase D.; Sin, Yong Chee Keita; Rheindt, Frank E.; Triantis, Kostas; Guilhaumon, François; Watson, David M.; Brotons, Lluís; Battisti, Corrado; Chu, Osanna; Rigal, FrançoisResearch on island species–area relationships (ISAR) has expanded to incorporate functional (IFDAR) and phylogenetic (IPDAR) diversity. However, relative to the ISAR, we know little about IFDARs and IPDARs, and lack synthetic global analyses of variation in form of these three categories of island diversity–area relationship (IDAR). Here, we undertake the first comparative evaluation of IDARs at the global scale using 51 avian archipelagic data sets representing true and habitat islands. Using null models, we explore how richness-corrected functional and phylogenetic diversity scale with island area. We also provide the largest global assessment of the impacts of species introductions and extinctions on the IDAR. Results show that increasing richness with area is the primary driver of the (non-richness corrected) IPDAR and IFDAR for many data sets. However, for several archipelagos, richness-corrected functional and phylogenetic diversity changes linearly with island area, suggesting that the dominant community assembly processes shift along the island area gradient. We also find that archipelagos with the steepest ISARs exhibit the biggest differences in slope between IDARs, indicating increased functional and phylogenetic redundancy on larger islands in these archipelagos. In several cases introduced species seem to have ‘re-calibrated’ the IDARs such that they resemble the historic period prior to recent extinctions.
- Identifying the Drivers of Spatial Taxonomic and Functional Beta-Diversity of British Breeding BirdsPublication . Wayman, Joseph P.; Sadler, Jonathan P.; Pugh, Thomas A. M.; Martin, Thomas E.; Tobias, Joseph A.; Matthews, Thomas J.Spatial variation in community composition may be driven by a variety of processes, including environmental filtering and dispersal limitation. While work has been conducted on the relative importance of these processes on various taxa and at varying resolutions, tests using high-resolution empirical data across large spatial extents are sparse. Here, we use a dataset on the presence/absence of breeding bird species collected at the 10 km × 10 km scale across the whole of Britain. Pairwise spatial taxonomic and functional beta diversity, and the constituent components of each (turnover and nestedness/richness loss or gain), were calculated alongside two other measures of functional change (mean nearest taxon distance and mean pairwise distance). Predictor variables included climate and land use measures, as well as a measure of elevation, human influence, and habitat diversity. Generalized dissimilarity modeling was used to analyze the contribution of each predictor variable to variation in the different beta diversity metrics. Overall, we found that there was a moderate and unique proportion of the variance explained by geographical distance per se, which could highlight the role of dispersal limitation in community dissimilarity. Climate, land use, and human influence all also contributed to the observed patterns, but a large proportion of the explained variance in beta diversity was shared between these variables and geographical distance. However, both taxonomic nestedness and functional nestedness were uniquely predicted by a combination of land use, human influence, elevation, and climate variables, indicating a key role for environmental filtering. These findings may have important conservation implications in the face of a warming climate and future land use change.
- L-band radar quantifies major disturbance of birds by fireworks in an urban areaPublication . Wayman, Joseph P.; Atkinson, George; Jahangir, Mohammed; White, Daniel; Matthews, Thomas J.; Antoniou, Michail; Reynolds, S. James; Sadler, Jon P.ABSTRACT: Fireworks and other pyrotechnics are acknowledged as sources of disturbance to wildlife, with evidence that many species react adversely to their sight and sound at discharge. However, how firework releases impact wildlife within a city landscape is poorly understood. Here, we explore the effect of fireworks on urban birds using an L-band staring radar (90-degree sector out to a 5 km range) to capture bird activity derived from flight tracks (i.e. 3D visualisation of individual flying birds built from radar detections) within the city of Birmingham, UK. Comparing the tracks between baseline periods with no fireworks and periods where fireworks are commonly discharged using a null model indicated that birds flew at higher elevations during firework periods (standardised effect sizes of 17.11, 26.54 and 5.83, for Diwali, Bonfire Night, and New Year's Eve, respectively). Birds also flew in more significant numbers (standardised effect sizes of 23.41, 7.98 and 7.19 for Diwali, Bonfire Night, and New Year's Eve, respectively). Therefore, bird activity was elevated during firework events at a time of night when many would otherwise be roosting. Such disturbance may have implications for avian biology since large public firework events occur at colder times of the year in the UK when birds have elevated thermoregulatory costs.
- Threatened and extinct island endemic birds of the world: Distribution, threats and functional diversityPublication . Matthews, Thomas J.; Wayman, Joseph P.; Cardoso, Pedro; Sayol, Ferran; Hume, Julian P.; Ulrich, Werner; Tobias, Joseph A.; Soares, Filipa C.; Thébaud, Christophe; Martin, Thomas E.; Triantis, Kostas A.AIM: The world's islands support disproportionate levels of endemic avian biodiversity despite suffering numerous extinctions. While intensive recent research has focused on island bird conservation or extinction, few global syntheses have considered these factors together from the perspective of morphological trait diversity. Here, we provide a global summary of the status and ecology of extant and extinct island birds, the threats they face and the implications of species loss for island functional diversity. LOCATION: Global. TAXON: Birds. METHODS: We provide a review of the literature on threatened and extinct island birds, with a particular focus on global studies that have incorporated functional diversity. Alongside this, we analyse IUCN Red List data in relation to distribution, threats and taxonomy. Using null models and functional hypervolumes, in combination with morphological trait data, we assess the functional diversity represented by threatened and extinct island endemic birds. RESULTS AND MAIN CONCLUSIONS: We find that almost half of all island endemic birds extant in 1500 CE are currently either extinct or threatened with extinction, with the majority of threatened extant species having declining population trends. We also found evidence of 66 island endemic subspecies extinctions. The primary threats to extant island endemic birds currently are agriculture, biological resource use, and invasive species. While there is overlap between the hotspots of threatened and extinct island endemics birds, there are some notable differences, including the Philippines and Indonesia, which support a substantial number of threatened species but have no recorded post-1500 CE bird extinctions. Traits associated with threatened island endemic birds are large body mass, flightlessness, aquatic predator, omnivorous and vertivorous trophic niches, marine habitat affinity, and, paradoxically, higher dispersal ability. Critically, we find that threatened endemics (i) occupy distinct areas of beak morphospace, and (ii) represent substantial unique areas of the overall functional space of island endemics. We caution that the loss of threatened species may have severe effects on the ecological functions birds provide on islands.
- Unravelling the complexities of biotic homogenization and heterogenization in the British avifaunaPublication . Wayman, Joseph P.; Sadler, Jonathan P.; Martin, Thomas E; Graham, Laura J; White, Hannah J; Tobias, Joseph; Matthews, Thomas J.Biotic homogenization is a process whereby species assemblages become more similar through time. The standard way of identifying the process of biotic homogenization is to look for decreases in spatial beta–diversity. However, using a single assemblage-level metric to assess homogenization can mask important changes in the occupancy patterns of individual species. Here, we analysed changes in the spatial beta–diversity patterns (i.e. biotic heterogenization or homogenization) of British bird assemblages within 30 km × 30 km regions between two periods (1988–1991 and 2008–2011). We partitioned the change in spatial beta–diversity into extirpation and colonization-resultant change (i.e. change in spatial beta–diversity within each region resulting from both extirpation and colonization). We used measures of abiotic change in combination with Bayesian modelling to disentangle the drivers of biotic heterogenization and homogenization. We detected both heterogenization and homogenization across the two time periods and three measures of diversity (taxonomic, phylogenetic, and functional). In addition, both extirpation and colonization contributed to the observed changes, with heterogenization mainly driven by extirpation and homogenization by colonization. These assemblage-level changes were primarily due to shifting occupancy patterns of generalist species. Compared to habitat generalists, habitat specialists had significantly (i) higher average contributions to colonization-resultant change (indicating heterogenization within a region due to colonization) and (ii) lower average contributions to extirpation-resultant change (indicating homogenization from extirpation). Generalists showed the opposite pattern. Increased extirpation-resultant homogenization within regions was associated with increased urban land cover and decreased habitat diversity, precipitation, and temperature. Changes in extirpation-resultant heterogenization and colonization-resultant heterogenization were associated with differences in elevation between regions and changes in temperature and land cover. Many of the ‘winners’ (i.e. species that increased in occupancy) were species that had benefitted from conservation action (e.g. buzzard (Buteo buteo). The ‘losers’ (i.e. those that decreased in occupancy) consisted primarily of previously common species, such as cuckoo (Cuculus canorus). Our results show that focusing purely on changes in spatial beta–diversity over time may obscure important information about how changes in the occupancy patterns of individual species contribute to homogenization and heterogenization.