Browsing by Author "Pigot, Alex L."
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- AVONET : morphological, ecological and geographical data for all birdsPublication . Tobias, Joseph A.; Sheard, Catherine; Pigot, Alex L.; Devenish, Adam J. M.; Yang, Jingyi; Sayol, Ferran; Neate‐Clegg, Montague H. C.; Alioravainen, Nico; Weeks, Thomas L.; Barber, Robert A.; Walkden, Patrick A.; Cooper, Jacob C.; Pauwels, Olivier S. G.; Analuddin, Kangkuso; Fjeldså, Jon; Seddon, Nathalie; Sweet, Paul R.; DeClerck, Fabrice A. J.; Naka, Luciano N.; Brawn, Jeffrey D.; Aleixo, Alexandre; MacGregor, Hannah E. A.; Böhning‐Gaese, Katrin; Rahbek, Carsten; Fritz, Susanne A.; Thomas, Gavin H.; Schleuning, Matthias; Jones, Samuel E. I.; Vincent, Claire; Phillips, Anna G.; Marples, Nicola M.; Montaño‐Centellas, Flavia A.; Leandro‐Silva, Victor; Claramunt, Santiago; Darski, Bianca; Freeman, Benjamin G.; Bregman, Tom P.; Cooney, Christopher R.; Hughes, Emma C.; Capp, Elliot J. R.; Varley, Zoë K.; Friedman, Nicholas R.; Korntheuer, Heiko; Corrales‐Vargas, Andrea; Trisos, Christopher H.; Weeks, Brian C.; Hanz, Dagmar M.; Töpfer, Till; Bravo, Gustavo A.; Remeš, Vladimír; Nowak, Larissa; Carneiro, Lincoln S.; Moncada R., Amilkar J.; Matysioková, Beata; Baldassarre, Daniel T.; Martínez‐Salinas, Alejandra; Wolfe, Jared D.; Chapman, Philip M.; Daly, Benjamin G.; Sorensen, Marjorie C.; Neu, Alexander; Ford, Michael A.; Mayhew, Rebekah J.; Fabio Silveira, Luis; Kelly, David J.; Annorbah, Nathaniel N. D.; Pollock, Henry S.; Grabowska‐Zhang, Ada M.; McEntee, Jay P.; Carlos T. Gonzalez, Juan; Meneses, Camila G.; Muñoz, Marcia C.; Powell, Luke L.; Jamie, Gabriel A.; Matthews, Thomas J.; Johnson, Oscar; Brito, Guilherme R. R.; Zyskowski, Kristof; Crates, Ross; Harvey, Michael G.; Jurado Zevallos, Maura; Hosner, Peter A.; Bradfer‐Lawrence, Tom; Maley, James M.; Stiles, F. Gary; Lima, Hevana S.; Provost, Kaiya L.; Chibesa, Moses; Mashao, Mmatjie; Howard, Jeffrey T.; Mlamba, Edson; Chua, Marcus A. H.; Li, Bicheng; Gómez, M. Isabel; García, Natalia C.; Päckert, Martin; Fuchs, Jérôme; Ali, Jarome R.; Derryberry, Elizabeth P.; Carlson, Monica L.; Urriza, Rolly C.; Brzeski, Kristin E.; Prawiradilaga, Dewi M.; Rayner, Matt J.; Miller, Eliot T.; Bowie, Rauri C. K.; Lafontaine, René‐Marie; Scofield, R. Paul; Lou, Yingqiang; Somarathna, Lankani; Lepage, Denis; Illif, Marshall; Neuschulz, Eike Lena; Templin, Mathias; Dehling, D. MatthiasFunctional traits offer a rich quantitative framework for developing and testing theories in evolutionary biology, ecology and ecosystem science. However, the potential of functional traits to drive theoretical advances and refine models of global change can only be fully realised when species-level information is complete. Here we present the AVONET dataset containing comprehensive functional trait data for all birds, including six ecological variables, 11 continuous morphological traits, and information on range size and location. Raw morphological measurements are presented from 90,020 individuals of 11,009 extant bird species sampled from 181 countries. These data are also summarised as species averages in three taxonomic formats, allowing integration with a global phylogeny, geographical range maps, IUCN Red List data and the eBird citizen science database. The AVONET dataset provides the most detailed picture of continuous trait variation for any major radiation of organisms, offering a global template for testing hypotheses and exploring the evolutionary origins, structure and functioning of biodiversity.
- AVOTREX: A Global Dataset of Extinct Birds and Their TraitsPublication . Sayol, Ferran; Wayman, Joseph P.; Dufour, Paul; Martin, Thomas E.; Hume, Julian P.; Jørgensen, Maria Wagner; Martínez‐Rubio, Natàlia; Sanglas, Ariadna; Soares, Filipa C.; Cooke, Rob; Mendenhall, Chase D.; Margolis, Jay R.; Illera, Juan Carlos; Lemoine, Rhys; Benavides, Eva; Lapiedra, Oriol; Triantis, Kostas A.; Pigot, Alex L.; Tobias, Joseph A.; Faurby, Søren; Matthews, Thomas J.Motivation Human activities have been reshaping the natural world for tens of thousands of years, leading to the extinction of hundreds of bird species. Past research has provided evidence of extinction selectivity towards certain groups of species, but trait information is lacking for the majority of clades, especially for prehistoric extinctions identified only through subfossil remains. This incomplete knowledge potentially obscures the structure of natural communities, undermining our ability to infer changes in biodiversity across space and time, including trends in functional and phylogenetic diversity. Biases in currently available trait data also limit our ability to identify drivers and processes of extinction. Here we present AVOTREX, an open-access database of species traits for all birds known to have gone extinct in the last 130,000 years. This database provides detailed morphological information for 610 extinct species, along with a pipeline to build phylogenetic trees that include these extinct species. Main Types of Variables Contained For each extinct bird species, we provide information on the taxonomy, geographic location, and period of extinction. We also present data on island endemicity, flight ability, and body mass, as well as standard measurements of external (matching the AVONET database of extant birds) and skeletal morphology from museum specimens where available. To ensure comprehensive morphological data coverage, we estimate all missing morphological measurements using a data imputation technique based on machine learning. Finally, we provide an R package to graft all extinct species onto a global phylogeny of extant species (BirdTree).