| Issue Date | Title | Author(s) | Type | Access Type |
| 2016 | Cephalopod identification keys to Histioteuthidae, Cranchiidae and Octopodiformes of the Azores, with an updated check-list | Gomes-Pereira, José N.; Gonçalves, João M.; Clarke, M. R. | article |  |
| 1996 | Cetaceans stranded in the Azores during 1992-1996 | Gonçalves, João M.; Barreiros, João P.; Azevedo, José M. N.; Norberto, Rita | article | |
| 1998 | Checklist of the shallow-water marine molluscs of the Azores: 1 - Pico, Faial, Flores and Corvo | Ávila, Sérgio P.; Azevedo, José M. N.; Gonçalves, João M.; Fontes, Jorge; Cardigos, Frederico | article | |
| 2000 | Checklist of the shallow-water marine molluscs of the Azores: 2 - São Miguel Island. | Ávila, Sérgio P.; Azevedo, José M. N.; Gonçalves, João M.; Fontes, José; Cardigos, Frederico | article | |
| 2017 | Deep-sea seven-arm octopus hijacks jellyfish in shallow waters | Rosa, Rui; Kelly, Jesse T.; Lopes, Vanessa M.; Paula, José R.; Gonçalves, João M.; Calado, Ricardo; Norman, Mark D.; Barreiros, João P. | article |  |
| Jun-1994 | Despojos alimentares encontrados em abrigos de polvo comum (Octopus vulgaris) (Mollusca: Cephalopoda) do Faial (Açores) : dados preliminares. | Gonçalves, João M.; Martins, Helen R. | report | |
| 2017 | First record of the cubera snapper, Lutjanus cyanopterus (Actinopterygii: Perciformes: Lutjanidae), from the Azores (NE Atlantic) and possible extension range for the West Atlantic | Ribeiro, Pedro; Gonçalves, João M.; Chavan, Govindraj; Fricke, Ronald; García-Mederos, Antonio M.; Tuset, Victor; Barreiros, João P. | article | |
| 2015 | Hijacking, hitchhiking and burglary behaviors of pelagic octopuses | Rosa, Rui; Kelly, Jesse T.; Norman, Mark; Lopes, Vanessa M.; Paula, José R.; Gonçalves, João M.; Barreiros, João P. | conferenceObject | |
| 1992 | Inter- and intra-specific variation of mercury levels in muscle of cephalopods from the Azores | Monteiro, Luís; Porteiro, Filipe M.; Gonçalves, João M. | article | |
| 1992 | Marine mammals stranded in the Azores during 1990-91 | Gonçalves, João M.; Galhardo, Leonor; Brum, João M. M. | article | |
| 2001 | New records and notes on little known shrimps (Crustacea, Decapoda) from Azorean waters. | Udekem d'Acoz, Cédric d’; Pinho, Mário Rui; Melo, Octávio; Gonçalves, João M.; Martins, Helen R. | article | - |
| 17-Feb-2006 | Non-indigenous marine species of the Azores | Cardigos, Frederico; Tempera, Fernando; Ávila, Sérgio P.; Gonçalves, João M.; Colaço, Ana; Santos, Ricardo S. | article | |
| Jun-1991 | The Octopoda (Mollusca: Cephalopoda) of the Azores | Gonçalves, João M. | article | |
| 2014 | The role of Malcolm Clarke (1930–2013) in the Azores as a scientist and educationist | Gomes-Pereira, José N.; Prieto, Rui; Neves, Verónica C.; Xavier, J.; Pham, Christopher K.; Gonçalves, João M.; Porteiro, Filipe M.; Santos, Ricardo S.; Martins, Helen R. | article | |
| 1990 | Sei whales (Balaenoptera borealis) encountered in the Azores : a new record for the region | Gordon, Jonathan; Steiner, Lisa; Gonçalves, João M. | article | |
| 1993 | Two new records of Ziphiidae (Cetacea) for the Azores with an updated checklist of cetacean species | Reiner, Francisco; Gonçalves, João M.; Santos, Ricardo S. | article | |
